Computing infrastructure
Depending on your needs (project, analysis, ...) and familiarity with command-line, Bilille can give you access to several computing infrastructures including:
- dedicated resources on the mutualised SLURM cluster hosted by the Université de Lille mesocenter in the regional Datacenter. This will soon include access to a wide range of pre-installed bioinformatics tools as well as GPUs for specific tasks (Deep Learning, Alphafold, ...).
- personalised support for use of the national IFB-core cluster: https://www.france-bioinformatique.fr/en/ifb-core-cluster/
- personalised support for use of the national cloud federation Biosphere: https://biosphere.france-bioinformatique.fr/
- personalised support for use of the national Galaxy infrastructure: https://usegalaxy.fr
Access
Due to a decision by the Mesocentre to discontinue its cloud infrastructure, it is no longer possible to request access to the Mésocentre's OpenStack Cloud service.
Existing accounts remain active for the time being. However, a gradual shutdown of the associated virtual machines and storage services is planned, with the service scheduled to be fully discontinued by summer 2027.
However, we can guide you through the process of getting access to the IFB Biosphere cloud (https://biosphere.france-bioinformatique.fr/).
Please contact us for further information.
Thanks to pooled funding from the EquipEx+ MuDiS4LS project and the Cross-Disciplinary-Project PIE (Protein-Interaction-Evolution), 22 Nvidia L40S 48Gb GPUs were progressively installed in the mutualised cluster between late 2024 and mid-2025. In addition, 182 TB of storage, accessible from the cluster, has been made available for research related to these two projects.
Any member of a local academic research unit or platform in the fields of biology and health can request access to these GPU resources.
The Process
Your administrative manager (usually your laboratory director) and then a Bilille representative must approve your account creation request. Administrative manager approval is required for any use of IT resources. Bilille then checks that your request fits within the platform's scientific perimeter. Then, the mesocenter team will create your account.
In Practice
The request is made by email. You must send a mail from your institutional address to your administrative manager, with a copy to bililleuniv-lillefr, guillaume.brysbaertuniv-lillefr and hpcuniv-lillefr.
Subject: Request to open an account on the Lille Mesocentre HPC Cluster (Bilille group).
Email text: Ask your manager to authorize you to use the HPC Cluster by replying to your message with "Reply All". Specify your laboratory, the nature of the project, the software used, your contract end date for fixed-term contracts, and any software licenses.
Example email:
Dear Sir/Madam,
As part of my research, I would like to use the HPC resources of the Lille University Computing Centre.
I have read and agree to comply with the Terms and Conditions of Use available on the Mesocentre website.
I would therefore like to request access to the HPC Cluster, which requires your approval.
To do so, simply reply to this email (via reply all) approving my request.
Research Unit and Team: XXXXX / XXXXX
Employer (U.Lille, CNRS, Inserm...): XXXXX
Position (permanent, CDD, PhD, intern...): XXXXX
Access end date: XXXXX
Principal(s) objective(s) of the project: XXXXX
Type(s) of data processed: XXXXX
Software(s) you plan to use: XXXXX
Thank you in advance.
Sincerely,
Best Practices and Rules of Use
The use of the HPC resources of the Lille University Computing Centre and the storage space of Bilille is conditional on the acceptance of the General Terms of Use (GTU) of the Mesocentre and the mudis4ls-storage charter (PDF).
You must notify hpcuniv-lillefr of any publication or communication of results requiring the use of the HPC Cluster. You must also explicitly acknowledge the Université de Lille mesocenter in these publications.
Documentation
All information on the HPC Cluster can be found on the Univ. Lille mesocenter documentation: https://hpc-doc.univ-lille.fr/en/docs/category/cluster-hybride/
Fundings
Bilille local infrastructure is historically hosted and administrated by the Université de Lille mesocenter. Thus, Bilille regularly provides funding for the purchase of computing resources within this mesocenter to guarantee access to dedicated resources.
In 2024, thanks to the EquipEx+ MuDiS4LS project and the Cross-Disciplinary-Project PIE, Bilille is investing in dedicated resources on the mutualised SLURM cluster hosted by the Université de Lille mesocenter.
Funding history:
- GIS IBiSA: in 2023 the funding associated with the GIS IBiSA labeling has enabled the renewal of part of the cloud's resources and to increase our capacity for hosting application.
- Université de Lille call for support: in 2019 and 2021 the Université de Lille through its call for support, has financed the renewal of part of the cloud's resources.
- RENABI-IFB: between 2015 and 2017 the ANR project RENABI-IFB has enabled the creation of the mutualised cloud used by Bilille and its expansion.